MolNFT v1 · #153021 · protein
Crystal structure of yeast RTT107
6J0V · Regulator of TY1 transposition protein 107: “Crystal structure of yeast RTT107”. X-ray diffraction, 11 pockets (best druggability 0.79). MolNFT v1 #153021 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6J0V
- Type
- protein
- Length
- 914 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Regulator of TY1 transposition protein 107
- UniProt
- P38850
- Pockets
- 11 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Regulator of TY1 transposition protein 107 | protein | 460 | 39% helix, 13% strand | P38850 |
| B | Regulator of TY1 transposition protein 107 | protein | 454 | 38% helix, 14% strand | P38850 |
Pockets
11 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1160 | 0.79 | 0.80 | 116 | empty |
| 2 | 102 | 0.79 | 0.98 | 18 | empty |
| 3 | 76 | 0.75 | 0.98 | 17 | empty |
| 4 | 477 | 0.69 | 0.80 | 69 | empty |
| 5 | 231 | 0.66 | 0.83 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 486 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P38850
- Elsewhere: RCSB PDB 6J0V · PDBe 6J0V · UniProt P38850
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.