MolNFT v1 · #153013 · protein
Crystal structure of intracellular B30.2 domain of BTN3A3 mutant in complex with hmbpp
6J0K · Butyrophilin subfamily 3 member A3: “Crystal structure of intracellular B30.2 domain of BTN3A3 mutant in complex with hmbpp”. X-ray diffraction, 1 ligand (H6P), 3 pockets (best druggability 0.62). MolNFT v1 #153013 on GenesisL1: 3D…
- PDB
- 6J0K
- Type
- protein
- Length
- 382 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Butyrophilin subfamily 3 member A3
- UniProt
- O00478
- Ligands
- H6P
- Pockets
- 3 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Butyrophilin subfamily 3 member A3 | protein | 191 | 7% helix, 36% strand | O00478 |
Ligands and binding sites
- H6P · (2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 326 | 0.62 | 0.79 | 41 | empty |
| 2 | 94 | 0.46 | 0.81 | 17 | empty |
| 3 | 136 | 0.45 | 0.77 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 366 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 6J0K · Crystal structure of intracellular B30.2 domain of BTN3A3 mutant in complex with HMBPP · the same entry in another collection · chain A against A, TM-score 1.00
- O00478 · AlphaFold monomer V2.0 prediction for butyrophilin subfamily 3 member A3 (O00478) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O00478
- Elsewhere: RCSB PDB 6J0K · PDBe 6J0K · UniProt O00478
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.