MolNFT v1 · #153005 · protein
Cryo-EM structure of an extracellular contractile injection system, pvc sheath complex in contracted state
6J0C · PVC2: “Cryo-EM structure of an extracellular contractile injection system, pvc sheath complex in contracted state”. Electron microscopy, 20 pockets (best druggability 0.70). MolNFT v1 #153005 on GenesisL1: 3D structure, binding…
- PDB
- 6J0C
- Type
- protein
- Length
- 4,248 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PVC2
- UniProt
- B6VNP3
- Pockets
- 20 · best druggability 0.70
Structure
electron microscopy · 1 distinct chain · 26% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, a, b, c, d, e, f | PVC2 | protein | 354 | 26% helix, 18% strand | B6VNP3 |
Pockets
20 pockets found on a 1 Å grid, 18 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 613 | 0.70 | 0.79 | 57 | empty |
| 2 | 635 | 0.70 | 0.79 | 61 | empty |
| 3 | 842 | 0.70 | 0.76 | 66 | empty |
| 4 | 827 | 0.70 | 0.76 | 61 | empty |
| 5 | 826 | 0.70 | 0.76 | 64 | empty |
Interfaces
24 interfaces between chains.
- B–b · 1962 Ų buried · 20 hydrogen bonds · protein-protein
- E–e · 1960 Ų buried · 21 hydrogen bonds · protein-protein
- C–c · 1955 Ų buried · 21 hydrogen bonds · protein-protein
- F–f · 1952 Ų buried · 21 hydrogen bonds · protein-protein
- D–d · 1952 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 6J0C · Cryo-EM Structure of an Extracellular Contractile Injection System, PVC sheath complex in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B6VNP3
- Elsewhere: RCSB PDB 6J0C · PDBe 6J0C · UniProt B6VNP3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.