MolNFT v1 · #152962 · protein
Crystal structure of DINB/YFIT protein DR0053 from D. radiodurans R1
6IZ2 · DINB/YFIT family protein: “Crystal structure of DINB/YFIT protein DR0053 from D. radiodurans R1”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #152962 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6IZ2
- Type
- protein
- Length
- 289 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DINB/YFIT family protein
- UniProt
- Q9RY97
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 67% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DINB/YFIT family protein | protein | 145 | 67% helix, 3% strand | Q9RY97 |
| B | DINB/YFIT family protein | protein | 144 | 68% helix, 3% strand | Q9RY97 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 117 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 6IZ2 · Crystal structure of DinB/YfiT protein DR0053 from D. radiodurans R1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RY97
- Elsewhere: RCSB PDB 6IZ2 · PDBe 6IZ2 · UniProt Q9RY97
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