MolNFT v1 · #152894 · protein

Crystal structure of a single strand DNA binding protein

6IWV · Single-stranded DNA-binding protein 2: “Crystal structure of a single strand DNA binding protein”. X-ray diffraction, 2 pockets (best druggability 0.32). MolNFT v1 #152894 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 6IWV
Type: protein
Length: 128 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Single-stranded DNA-binding protein 2
UniProt: P81877
Pockets: 2 · best druggability 0.32

Structure

x-ray diffraction · 2 distinct chains · 64% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Single-stranded DNA-binding protein 2	protein	66	62% helix, 0% strand	P81877
B	Single-stranded DNA-binding protein 2	protein	62	66% helix, 0% strand	P81877

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	70	0.32	0.74	20	empty
2	60	0.27	0.72	12	empty

Interfaces

1 interface between chains.

A–B · 1489 Å² buried · 22 hydrogen bonds · protein-protein

Compared structures

6IWV · Crystal structure of a single strand DNA binding protein · the same entry in another collection · chain A against A, TM-score 1.00
P81877 · AlphaFold monomer V2.0 prediction for single-stranded DNA-binding protein 2 (P81877) · a predicted model of the same protein · chain B against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P81877
Elsewhere: RCSB PDB 6IWV · PDBe 6IWV · UniProt P81877

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