MolNFT v1 · #152865 · protein
Crystal structure of iron-bound hita from pseudomonas aeruginosa
6IVY · Periplasmic ferric iron-binding protein hita: “Crystal structure of iron-bound hita from pseudomonas aeruginosa”. X-ray diffraction, 2 ligands (FE, PO4), 5 pockets (best druggability 0.73). MolNFT v1 #152865 on GenesisL1: 3D…
- PDB
- 6IVY
- Type
- protein
- Length
- 613 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Periplasmic ferric iron-binding protein hita
- UniProt
- Q9HVA8
- Ligands
- FE, PO4
- Pockets
- 5 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic ferric iron-binding protein hita | protein | 306 | 46% helix, 17% strand | Q9HVA8 |
| B | Periplasmic ferric iron-binding protein hita | protein | 307 | 46% helix, 18% strand | Q9HVA8 |
Ligands and binding sites
- FE · Fe (III) ion · metal · 2 copies · chains A, B
- PO4 · Phosphate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1139 | 0.73 | 0.76 | 141 | PO4 |
| 2 | 237 | 0.51 | 0.76 | 37 | PO4 |
| 3 | 55 | 0.38 | 0.80 | 18 | empty |
| 4 | 56 | 0.38 | 0.79 | 12 | empty |
| 5 | 51 | 0.26 | 0.73 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 389 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6IVY · Crystal structure of iron-bound HitA from Pseudomonas aeruginosa · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HVA8
- Elsewhere: RCSB PDB 6IVY · PDBe 6IVY · UniProt Q9HVA8
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