MolNFT v1 · #152846 · protein
Crystal structure of the S. typhimurium oxaloacetate decarboxylase beta-gamma sub-complex
6IVA · Oxaloacetate decarboxylase beta chain: “Crystal structure of the S. typhimurium oxaloacetate decarboxylase beta-gamma sub-complex”. X-ray diffraction, 16 pockets (best druggability 0.82). MolNFT v1 #152846 on GenesisL1: 3D…
- PDB
- 6IVA
- Type
- protein
- Length
- 1,386 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oxaloacetate decarboxylase beta chain; Probable oxaloacetate decarboxylase gamma chain
- EC
- 7.2.4.2
- UniProt
- A0A0F7JAV8, A0A0F7JC72
- Pockets
- 16 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 74% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E | Oxaloacetate decarboxylase beta chain (EC 7.2.4.2) | protein | 420 | 71% helix, 0% strand | A0A0F7JAV8 |
| B, D, F | Probable oxaloacetate decarboxylase gamma chain (EC 7.2.4.2) | protein | 42 | 95% helix, 0% strand | A0A0F7JC72 |
Pockets
16 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 748 | 0.82 | 0.85 | 39 | empty |
| 2 | 647 | 0.76 | 0.82 | 82 | empty |
| 3 | 712 | 0.73 | 0.79 | 70 | empty |
| 4 | 310 | 0.66 | 0.81 | 33 | empty |
| 5 | 295 | 0.65 | 0.81 | 46 | empty |
Interfaces
6 interfaces between chains.
- C–D · 1731 Ų buried · 2 hydrogen bonds · protein-protein
- E–F · 1621 Ų buried · 1 hydrogen bond · protein-protein
- A–B · 1584 Ų buried · 1 hydrogen bond · protein-protein
- A–E · 1510 Ų buried · 4 hydrogen bonds · protein-protein
- C–E · 1505 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 6IVA · Crystal structure of the S. typhimurium oxaloacetate decarboxylase beta-gamma sub-complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F7JAV8
- Every structure of UniProt A0A0F7JC72
- Elsewhere: RCSB PDB 6IVA · PDBe 6IVA · UniProt A0A0F7JAV8 · UniProt A0A0F7JC72
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