MolNFT v1 · #15284 · protein

Model for active reca filament

1N03 · Reca protein: “Model for active reca filament”. Electron microscopy, 1 ligand (ADP), 7 pockets (best druggability 0.36). MolNFT v1 #15284 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1N03
Type: protein
Length: 2,121 residues
Chains: 7
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Reca protein
UniProt: P0A7G6
Ligands: ADP
Pockets: 7 · best druggability 0.36

Structure

electron microscopy · 1 distinct chain · 0% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G	Reca protein	protein	303	0% helix, 0% strand	P0A7G6

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · 7 copies · chains A, B, C, D, E, F, G

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.36	0.73	20	empty
2	76	0.32	0.72	19	empty
3	62	0.29	0.72	22	empty
4	61	0.29	0.72	19	empty
5	56	0.28	0.72	21	empty

Interfaces

6 interfaces between chains.

E–F · 120 Å² buried · 0 hydrogen bonds · protein-protein
F–G · 119 Å² buried · 0 hydrogen bonds · protein-protein
A–B · 118 Å² buried · 0 hydrogen bonds · protein-protein
B–C · 118 Å² buried · 0 hydrogen bonds · protein-protein
C–D · 118 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

1N03 · Model for Active RecA Filament · the same entry in another collection · chain G against G, TM-score 1.00
P0A7G6 · AlphaFold monomer V2.0 prediction for protein reca (P0A7G6) · a predicted model of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A7G6
Elsewhere: RCSB PDB 1N03 · PDBe 1N03 · UniProt P0A7G6

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