MolNFT v1 · #152824 · protein
Crystal structure of lamprey immune protein
6IUL · Natterin-like protein: “Crystal structure of lamprey immune protein”. X-ray diffraction, 4 pockets (best druggability 0.68). MolNFT v1 #152824 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6IUL
- Type
- protein
- Length
- 628 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Natterin-like protein
- UniProt
- K7WEH5
- Pockets
- 4 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 65% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Natterin-like protein | protein | 314 | 3% helix, 65% strand | K7WEH5 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 141 | 0.68 | 0.89 | 32 | empty |
| 2 | 51 | 0.68 | 0.97 | 17 | empty |
| 3 | 108 | 0.50 | 0.81 | 20 | empty |
| 4 | 57 | 0.38 | 0.80 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1636 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 6IUL · Crystal structure of Lamprey immune protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K7WEH5
- Elsewhere: RCSB PDB 6IUL · PDBe 6IUL · UniProt K7WEH5
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