MolNFT v1 · #152780 · DNA

Structure of human telomeric DNA with 5-selenophene-modified deoxyuridine at residue 12

6ISW · DNA (22-mer): “Structure of human telomeric DNA with 5-selenophene-modified deoxyuridine at residue 12”. X-ray diffraction, 1 ligand (K), 1 pocket (best druggability 0.25). MolNFT v1 #152780 on GenesisL1: 3D structure, binding sites…

PDB: 6ISW
Type: DNA
Length: 22 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (22-mer)
Ligands: K
Pockets: 1 · best druggability 0.25

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA (22-mer)	dna	22	—	—

Ligands and binding sites

K · Potassium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	52	0.25	0.74	7	empty

Modifications

Observed in the structure: 1 modified (nucleotide modification).

Compared structures

6ISW · Structure of human telomeric DNA with 5-selenophene-modified deoxyuridine at residue 12 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6ISW · PDBe 6ISW

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