MolNFT v1 · #152768 · protein
Snoal-like cyclase xime
6ISK · Xime, snoal-like domain protein: “Snoal-like cyclase xime”. X-ray diffraction, 4 pockets (best druggability 0.71). MolNFT v1 #152768 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6ISK
- Type
- protein
- Length
- 240 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xime, snoal-like domain protein
- EC
- 4.2.99.-
- UniProt
- U5Q2N8
- Pockets
- 4 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Xime, snoal-like domain protein (EC 4.2.99.-) | protein | 120 | 30% helix, 46% strand | U5Q2N8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 217 | 0.71 | 0.86 | 30 | EDO |
| 2 | 206 | 0.70 | 0.86 | 34 | MLA |
| 3 | 162 | 0.43 | 0.74 | 19 | empty |
| 4 | 63 | 0.27 | 0.73 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 321 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 6ISK · SnoaL-like cyclase XimE · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt U5Q2N8
- Elsewhere: RCSB PDB 6ISK · PDBe 6ISK · UniProt U5Q2N8
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