MolNFT v1 · #152641 · protein
Glyceraldehyde-3-phosphate dehydrogenase a (apo-form)
6IOJ: “Glyceraldehyde-3-phosphate dehydrogenase a (apo-form)”. X-ray diffraction, 2 pockets (best druggability 0.58). MolNFT v1 #152641 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6IOJ
- Type
- protein
- Length
- 329 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glyceraldehyde-3-phosphate dehydrogenase a
- EC
- 1.2.1.12
- UniProt
- P0A9B2
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glyceraldehyde-3-phosphate dehydrogenase a (EC 1.2.1.12) | protein | 329 | 29% helix, 27% strand | P0A9B2 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 378 | 0.58 | 0.75 | 35 | empty |
| 2 | 51 | 0.30 | 0.76 | 12 | empty |
Compared structures
- 6IOJ · Glyceraldehyde-3-phosphate dehydrogenase A (apo-form) · the same entry in another collection · chain A against A, TM-score 1.00
- P0A9B2 · AlphaFold monomer V2.0 prediction for glyceraldehyde-3-phosphate dehydrogenase a (P0A9B2) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A9B2
- Elsewhere: RCSB PDB 6IOJ · PDBe 6IOJ · UniProt P0A9B2
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