MolNFT v1 · #152634 · protein
The structure of the H109A mutant of udgx in complex with uracil
6IOB · Phage SPO1 DNA polymerase-related protein: “The structure of the H109A mutant of udgx in complex with uracil”. X-ray diffraction, 2 ligands (URA, SF4), 1 pocket (best druggability 0.38). MolNFT v1 #152634 on GenesisL1: 3D structure…
- PDB
- 6IOB
- Type
- protein
- Length
- 210 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phage SPO1 DNA polymerase-related protein
- EC
- 2.7.7.7
- UniProt
- I7F541
- Ligands
- URA, SF4
- Pockets
- 1 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phage SPO1 DNA polymerase-related protein (EC 2.7.7.7) | protein | 210 | 43% helix, 12% strand | I7F541 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 114 | 0.38 | 0.74 | 23 | URA |
Compared structures
- 6IOB · The structure of the H109A mutant of UdgX in complex with uracil · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I7F541
- Elsewhere: RCSB PDB 6IOB · PDBe 6IOB · UniProt I7F541
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