MolNFT v1 · #152633 · protein
The structure of udgx in complex with uracil
6IOA · Phage SPO1 DNA polymerase-related protein: “The structure of udgx in complex with uracil”. X-ray diffraction, 3 ligands (SF4, URA, SO4), 1 pocket (best druggability 0.58). MolNFT v1 #152633 on GenesisL1: 3D structure, binding sites…
- PDB
- 6IOA
- Type
- protein
- Length
- 207 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phage SPO1 DNA polymerase-related protein
- UniProt
- I7F541
- Ligands
- SF4, URA, SO4
- Pockets
- 1 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phage SPO1 DNA polymerase-related protein | protein | 207 | 43% helix, 12% strand | I7F541 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · chains A
- URA · Uracil · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 183 | 0.58 | 0.81 | 27 | URA, SO4 |
Compared structures
- 6IOA · The structure of UdgX in complex with uracil · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I7F541
- Elsewhere: RCSB PDB 6IOA · PDBe 6IOA · UniProt I7F541
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