MolNFT v1 · #152542 · protein

Crystal structure of a mutant ptal-N*01:01 for 2.9 ångström, 52M 53D 54L deleted

6ILE · MHC class I antigen: “Crystal structure of a mutant ptal-N*01:01 for 2.9 ångström, 52M 53D 54L deleted”. X-ray diffraction, 3 pockets (best druggability 0.69). MolNFT v1 #152542 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 6ILE
Type: protein
Length: 382 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MHC class I antigen; Beta-2-microglobulin; Hev-1
UniProt: A0A125R585
Pockets: 3 · best druggability 0.69

Structure

x-ray diffraction · 3 distinct chains · 18% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MHC class I antigen	protein	276	25% helix, 39% strand	A0A125R585
B	Beta-2-microglobulin	protein	98	0% helix, 48% strand	—
C	Hev-1	protein	8	0% helix, 0% strand	—

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	533	0.69	0.79	55	empty
2	78	0.46	0.82	22	empty
3	74	0.34	0.76	18	empty

Interfaces

2 interfaces between chains.

A–B · 1393 Å² buried · 20 hydrogen bonds · protein-protein
A–C · 881 Å² buried · 17 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

6ILE · Crystal structure of a mutant ptal-N*01:01 for 2.9 ångström, 52M 53D 54L deleted · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A125R585
Elsewhere: RCSB PDB 6ILE · PDBe 6ILE · UniProt A0A125R585

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