MolNFT v1 · #152537 · protein

One glycerol complexed crystal structure of fructuronate-tagaturonate epimerase uxae from cohnella laeviribosi

6IL9 · Fructuronate-tagaturonate epimerase uxae from cohnella…: “One glycerol complexed crystal structure of fructuronate-tagaturonate epimerase uxae from cohnella laeviribosi”. X-ray diffraction, 1 ligand (ZN), 3 pockets (best…

PDB: 6IL9
Type: protein
Length: 490 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fructuronate-tagaturonate epimerase uxae from cohnella laeviribosi in complex with 1…
EC: 5.1.2.7
Ligands: ZN
Pockets: 3 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fructuronate-tagaturonate epimerase uxae from cohnella laeviribosi in complex with 1 glycerol (EC 5.1.2.7)	protein	490	52% helix, 17% strand	—

Ligands and binding sites

ZN · Zinc ion · metal · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	265	0.68	0.84	41	GOL
2	370	0.65	0.79	29	empty
3	72	0.33	0.75	18	empty

Modifications

Observed in the structure: 1 modified (phosphorylation).

Compared structures

6IL9 · One Glycerol complexed Crystal structure of fructuronate-tagaturonate epimerase UxaE from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6IL9 · PDBe 6IL9

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.