MolNFT v1 · #152523 · protein
Crystal structure of YFIB(W55L)
6IKI: “Crystal structure of YFIB(W55L)”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.60). MolNFT v1 #152523 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6IKI
- Type
- protein
- Length
- 269 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yfib
- UniProt
- Q9I4L6
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yfib | protein | 134 | 46% helix, 20% strand | Q9I4L6 |
| B | Yfib | protein | 135 | 46% helix, 22% strand | Q9I4L6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 111 | 0.60 | 0.86 | 22 | empty |
| 2 | 126 | 0.40 | 0.75 | 17 | empty |
| 3 | 102 | 0.36 | 0.74 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 625 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 6IKI · Crystal structure of YfiB(W55L) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I4L6
- Elsewhere: RCSB PDB 6IKI · PDBe 6IKI · UniProt Q9I4L6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.