MolNFT v1 · #152510 · DNA
Solution NMR structure of a 14-mer dsdna complexed with a novel nir fluorescent probe qcy-dt
6IJV · DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*TP*TP*TP*CP*GP*CP*G)-3'): “Solution NMR structure of a 14-mer dsdna complexed with a novel nir fluorescent probe qcy-dt”. Solution nmr, 1 ligand (QCY). MolNFT v1 #152510 on GenesisL1: 3D structure…
- PDB
- 6IJV
- Type
- DNA
- Length
- 28 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*TP*TP*TP*CP*GP*CP*G)-3')
- Ligands
- QCY
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*TP*TP*TP*CP*GP*CP*G)-3') | dna | 14 | — | — |
Ligands and binding sites
- QCY · 2,2'-{(4-hydroxy-1,3-phenylene)di[(E)ethene-2,1-diyl]}bis(3-methyl-1,3-benzothiazol-3-ium) · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 635 Ų buried · 62 hydrogen bonds · nucleic-nucleic
Compared structures
- 6IJV · Solution NMR structure of a 14-mer dsDNA complexed with a novel NIR fluorescent probe… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6IJV · PDBe 6IJV
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.