MolNFT v1 · #152434 · protein
Adeno-associated virus 2 in complex with aavr
6IHB · Dyslexia-associated protein KIAA0319-like protein: “Adeno-associated virus 2 in complex with aavr”. Electron microscopy, 9 pockets (best druggability 0.63). MolNFT v1 #152434 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6IHB
- Type
- protein
- Length
- 611 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dyslexia-associated protein KIAA0319-like protein; Capsid protein VP1
- UniProt
- Q8IZA0, P03135
- Pockets
- 9 · best druggability 0.63
Structure
electron microscopy · 2 distinct chains · 5% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| R | Dyslexia-associated protein KIAA0319-like protein | protein | 94 | 0% helix, 39% strand | Q8IZA0 |
| A | Capsid protein VP1 | protein | 517 | 6% helix, 32% strand | P03135 |
Pockets
9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 560 | 0.63 | 0.75 | 63 | empty |
| 2 | 271 | 0.55 | 0.76 | 41 | empty |
| 3 | 126 | 0.42 | 0.76 | 23 | empty |
| 4 | 161 | 0.42 | 0.74 | 25 | empty |
| 5 | 105 | 0.36 | 0.74 | 22 | empty |
Interfaces
1 interface between chains.
- R–A · 604 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IZA0
- Every structure of UniProt P03135
- Elsewhere: RCSB PDB 6IHB · PDBe 6IHB · UniProt Q8IZA0 · UniProt P03135
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