MolNFT v1 · #152317 · protein
Crystal structure of BAI1/ELMO2 complex
6IDX · Engulfment and cell motility protein 2: “Crystal structure of BAI1/ELMO2 complex”. X-ray diffraction, 5 pockets (best druggability 0.75). MolNFT v1 #152317 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6IDX
- Type
- protein
- Length
- 526 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Engulfment and cell motility protein 2; Adhesion G protein-coupled receptor B1
- UniProt
- Q96JJ3, Q3UHD1
- Pockets
- 5 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 64% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Engulfment and cell motility protein 2 | protein | 501 | 65% helix, 5% strand | Q96JJ3 |
| C | Adhesion G protein-coupled receptor B1 | protein | 25 | 52% helix, 0% strand | Q3UHD1 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 316 | 0.75 | 0.86 | 28 | empty |
| 2 | 71 | 0.48 | 0.84 | 17 | empty |
| 3 | 66 | 0.36 | 0.78 | 19 | empty |
| 4 | 80 | 0.34 | 0.75 | 12 | empty |
| 5 | 62 | 0.30 | 0.75 | 15 | empty |
Interfaces
1 interface between chains.
- A–C · 1259 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 6IDX · Crystal Structure of BAI1/ELMO2 complex · the same entry in another collection · chain A against A, TM-score 1.00
- Q96JJ3 · AlphaFold monomer V2.0 prediction for engulfment and cell motility protein 2 (Q96JJ3) · a predicted model of the same protein · chain A against A, TM-score 0.98
- Q3UHD1 · AlphaFold monomer V2.0 prediction for adhesion G protein-coupled receptor B1 (Q3UHD1) · a predicted model of the same protein · chain C against A, TM-score 0.48
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96JJ3
- Every structure of UniProt Q3UHD1
- Elsewhere: RCSB PDB 6IDX · PDBe 6IDX · UniProt Q96JJ3 · UniProt Q3UHD1
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