MolNFT v1 · #152294 · protein
Crystal structure of RV0731C from mycobacterium tuberculosis at 1.63 ångströms.
6ID6 · Putative S-adenosyl-L-methionine-dependent…: “Crystal structure of RV0731C from mycobacterium tuberculosis at 1.63 ångströms.”. X-ray diffraction, 1 ligand (MG), 3 pockets (best druggability 0.83). MolNFT v1 #152294 on GenesisL1: 3D…
- PDB
- 6ID6
- Type
- protein
- Length
- 302 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative S-adenosyl-L-methionine-dependent methyltransferase RV0731C
- EC
- 2.1.1.-
- UniProt
- P9WFI5
- Ligands
- MG
- Pockets
- 3 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative S-adenosyl-L-methionine-dependent methyltransferase RV0731C (EC 2.1.1.-) | protein | 302 | 48% helix, 14% strand | P9WFI5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 632 | 0.83 | 0.87 | 77 | PGE |
| 2 | 65 | 0.48 | 0.84 | 17 | empty |
| 3 | 54 | 0.29 | 0.75 | 14 | empty |
Compared structures
- 6ID6 · Crystal structure of Rv0731c from Mycobacterium tuberculosis at 1.63 Angstroms. · the same entry in another collection · chain A against A, TM-score 1.00
- P9WFI5 · AlphaFold monomer V2.0 prediction for putative S-adenosyl-L- methionine-dependent… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WFI5
- Elsewhere: RCSB PDB 6ID6 · PDBe 6ID6 · UniProt P9WFI5
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