MolNFT v1 · #152230 · protein

Thermophage P23-45 procapsid

6IBC · Major head protein: “Thermophage P23-45 procapsid”. Electron microscopy, 20 pockets (best druggability 0.78). MolNFT v1 #152230 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6IBC
Type: protein
Length: 2,588 residues
Chains: 7
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Major head protein
UniProt: A7XXC2
Pockets: 20 · best druggability 0.78

Structure

electron microscopy · 3 distinct chains · 30% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E	Major head protein	protein	374	31% helix, 17% strand	A7XXC2
F	Major head protein	protein	373	30% helix, 15% strand	A7XXC2
G	Major head protein	protein	345	30% helix, 12% strand	A7XXC2

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	490	0.78	0.85	74	empty
2	916	0.78	0.80	112	empty
3	66	0.75	0.98	15	empty
4	400	0.74	0.85	59	empty
5	659	0.73	0.79	73	empty

Interfaces

8 interfaces between chains.

A–F · 2275 Å² buried · 27 hydrogen bonds · protein-protein
A–B · 2235 Å² buried · 22 hydrogen bonds · protein-protein
E–F · 2161 Å² buried · 24 hydrogen bonds · protein-protein
D–E · 2155 Å² buried · 23 hydrogen bonds · protein-protein
C–D · 2083 Å² buried · 23 hydrogen bonds · protein-protein

Compared structures

6IBC · Thermophage P23-45 procapsid · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7XXC2
Elsewhere: RCSB PDB 6IBC · PDBe 6IBC · UniProt A7XXC2

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