MolNFT v1 · #152048 · protein

BLMNBP1 binding protein of an ABC transporter from bifidobacterium animalis subsp. lactis ATCC27673 in complex with mannobiose

6I5W · Solute binding protein BLMNBP1, BLAC_00780 in complex with…: “BLMNBP1 binding protein of an ABC transporter from bifidobacterium animalis subsp. lactis ATCC27673 in…”. X-ray diffraction, 2 ligands (BMA, ZN), 1 pocket (best…

PDB: 6I5W
Type: protein
Length: 427 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Solute binding protein BLMNBP1, BLAC_00780 in complex with mannopentaose
Ligands: BMA, ZN
Pockets: 1 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Solute binding protein BLMNBP1, BLAC_00780 in complex with mannopentaose	protein	427	40% helix, 16% strand	—

Ligands and binding sites

BMA · beta-D-mannopyranose · sugar · 5 copies · chains A
ZN · Zinc ion · metal · 17 copies · chains A
ACT · Acetate ion · additive · 7 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	875	0.82	0.84	75	BMA

Compared structures

6I5W · BlMnBP1 binding protein of an ABC transporter from Bifidobacterium animalis subsp. lactis… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6I5W · PDBe 6I5W

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