MolNFT v1 · #151962 · protein

Crystal structure of V31PIZZA6-ayw, a circularly permuted designer protein

6I39: “Crystal structure of V31PIZZA6-ayw, a circularly permuted designer protein”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.72). MolNFT v1 #151962 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6I39
Type: protein
Length: 251 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: V31PIZZA6-ayw
Ligands: MG
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	V31PIZZA6-ayw	protein	251	7% helix, 39% strand	—

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	547	0.72	0.81	60	MG

Compared structures

6I39 · Crystal structure of v31Pizza6-AYW, a circularly permuted designer protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6I39 · PDBe 6I39

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