MolNFT v1 · #151924 · protein
Flavin analogue sheds light on light-oxygen-voltage domain mechanism
6I23 · AUREOCHROME1-like protein: “Flavin analogue sheds light on light-oxygen-voltage domain mechanism”. X-ray diffraction, 2 ligands (9O9, CL), 3 pockets (best druggability 0.70). MolNFT v1 #151924 on GenesisL1: 3D structure, binding…
- PDB
- 6I23
- Type
- protein
- Length
- 262 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AUREOCHROME1-like protein
- UniProt
- C5NSW6
- Ligands
- 9O9, CL
- Pockets
- 3 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AUREOCHROME1-like protein | protein | 130 | 33% helix, 31% strand | C5NSW6 |
| B | AUREOCHROME1-like protein | protein | 132 | 35% helix, 30% strand | C5NSW6 |
Ligands and binding sites
- 9O9 · 1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-5-O-phosphono-D-ribitol · ligand · 2 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 6 copies · chains A, B
- ACT · Acetate ion · additive · 2 copies · chains A, B
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 184 | 0.70 | 0.88 | 27 | 9O9, CL |
| 2 | 188 | 0.69 | 0.87 | 25 | 9O9, CL |
| 3 | 154 | 0.61 | 0.84 | 28 | EDO |
Interfaces
1 interface between chains.
- A–B · 893 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 6I23 · Flavin Analogue Sheds Light on Light-Oxygen-Voltage Domain Mechanism · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C5NSW6
- Elsewhere: RCSB PDB 6I23 · PDBe 6I23 · UniProt C5NSW6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.