MolNFT v1 · #151844 · protein

Crystal structure of a pot family transporter in complex with 5- aminolevulinic acid

6HZP · Peptide ABC transporter permease: “Crystal structure of a pot family transporter in complex with 5- aminolevulinic acid”. X-ray diffraction, 1 ligand (FVT), 4 pockets (best druggability 0.82). MolNFT v1 #151844 on GenesisL1: 3D…

PDB: 6HZP
Type: protein
Length: 487 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peptide ABC transporter permease
UniProt: A0A1L8Y4Q3
Ligands: FVT
Pockets: 4 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 79% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peptide ABC transporter permease	protein	487	79% helix, 3% strand	A0A1L8Y4Q3

Ligands and binding sites

FVT · 5-azanyl-4-oxidanylidene-pentanoic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1102	0.82	0.83	94	FVT
2	560	0.63	0.74	41	empty
3	84	0.43	0.79	15	empty
4	63	0.30	0.73	13	empty

Compared structures

6HZP · Crystal structure of a POT family transporter in complex with 5-aminolevulinic acid · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1L8Y4Q3
Elsewhere: RCSB PDB 6HZP · PDBe 6HZP · UniProt A0A1L8Y4Q3

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