MolNFT v1 · #151682 · protein
The apo structure of dps from listeria innocua before soaking experiments with zn, co and la
6HV1 · DNA protection during starvation protein: “The apo structure of dps from listeria innocua before soaking experiments with zn, co and la”. X-ray diffraction, 14 pockets (best druggability 0.65). MolNFT v1 #151682 on GenesisL1: 3D…
- PDB
- 6HV1
- Type
- protein
- Length
- 899 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA protection during starvation protein
- EC
- 1.16.-.-
- UniProt
- P80725
- Pockets
- 14 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 75% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D, E, F | DNA protection during starvation protein (EC 1.16.-.-) | protein | 150 | 75% helix, 0% strand | P80725 |
| C | DNA protection during starvation protein (EC 1.16.-.-) | protein | 149 | 75% helix, 0% strand | P80725 |
Pockets
14 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 570 | 0.65 | 0.76 | 63 | empty |
| 2 | 123 | 0.53 | 0.82 | 18 | empty |
| 3 | 128 | 0.46 | 0.77 | 16 | empty |
| 4 | 127 | 0.44 | 0.77 | 17 | empty |
| 5 | 129 | 0.43 | 0.76 | 18 | empty |
Interfaces
10 interfaces between chains.
- B–E · 1310 Ų buried · 14 hydrogen bonds · protein-protein
- A–D · 1293 Ų buried · 15 hydrogen bonds · protein-protein
- B–C · 533 Ų buried · 6 hydrogen bonds · protein-protein
- B–D · 531 Ų buried · 6 hydrogen bonds · protein-protein
- C–D · 528 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 6HV1 · The apo structure of Dps from Listeria innocua before soaking experiments with Zn, Co and… · the same entry in another collection · chain F against F, TM-score 1.00
- P80725 · AlphaFold monomer V2.0 prediction for DNA protection during starvation protein (P80725) · a predicted model of the same protein · chain E against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80725
- Elsewhere: RCSB PDB 6HV1 · PDBe 6HV1 · UniProt P80725
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.