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MolNFT v1 · #151574 · protein

Crystal structure of btk kinase domain complexed with 12-(6-tert- butyl-8-fluoro-1-oxo-phthalazin-2-yl)-9-hydroxy-6-methyl-4-[[5- (morpholine-4-carbonyl)-2-PYRIDYL]AMINO]-6-AZATRICYCLO[9.4.0.02, 7]PENTADECA-1(15),2(7),3,11,13-pentaen-5-one

6HRT · Tyrosine-protein kinase btk: “Crystal structure of btk kinase domain complexed with 12-(6-tert…”. X-ray diffraction, 1 ligand (GMW), 2 pockets (best druggability 0.72). MolNFT v1 #151574 on GenesisL1: 3D structure, binding sites and…

PDB
6HRT
Type
protein
Length
263 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Tyrosine-protein kinase btk
EC
2.7.10.2
UniProt
Q06187
Ligands
GMW
Pockets
2 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 16% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ATyrosine-protein kinase btk (EC 2.7.10.2)protein26343% helix, 16% strandQ06187

Ligands and binding sites

  • GMW · (9~{S})-12-(6-~{tert}-butyl-8-fluoranyl-1-oxidanylidene-phthalazin-2-yl)-6-methyl-4-[(5-morpholin-4-ylcarbonylpyridin-2-yl)amino]-9-oxidanyl-6-azatricyclo[9.4.0.0^{2,7}]pentadeca-1(15),2(7),3,11, 13-pentaen-5-one · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
14140.720.8348GMW
2880.550.8520empty

Compared structures

  • 6HRT · CRYSTAL STRUCTURE OF BTK KINASE DOMAIN COMPLEXED WITH… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q06187 · AlphaFold monomer V2.0 prediction for tyrosine-protein kinase btk (Q06187) · a predicted model of the same protein · chain A against A, TM-score 0.99

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