MolNFT v1 · #151567 · protein

Crystal structure of the kelch domain of human KLHL17

6HRL · Kelch-like protein 17: “Crystal structure of the kelch domain of human KLHL17”. X-ray diffraction, 3 ligands (NA, CL, SO4), 4 pockets (best druggability 0.72). MolNFT v1 #151567 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 6HRL
Type: protein
Length: 574 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Kelch-like protein 17
UniProt: Q6TDP4
Ligands: NA, CL, SO4
Pockets: 4 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Kelch-like protein 17	protein	287	0% helix, 52% strand	Q6TDP4

Ligands and binding sites

NA · Sodium ion · metal · 4 copies · chains A, B
CL · Chloride ion · ion · 11 copies · chains A, B
SO4 · Sulfate ion · ion · 8 copies · chains A, B
EDO · 1,2-ethanediol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	516	0.72	0.81	63	SO4
2	303	0.65	0.81	39	CL
3	323	0.64	0.80	39	CL
4	91	0.31	0.72	22	empty

Interfaces

1 interface between chains.

A–B · 596 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

6HRL · Crystal structure of the Kelch domain of human KLHL17 · the same entry in another collection · chain A against A, TM-score 1.00
Q6TDP4 · AlphaFold monomer V2.0 prediction for kelch-like protein 17 (Q6TDP4) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6TDP4
Elsewhere: RCSB PDB 6HRL · PDBe 6HRL · UniProt Q6TDP4

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