MolNFT v1 · #151565 · protein
APO - YNDL
6HRJ: “APO - YNDL”. X-ray diffraction, 3 ligands (010, FAH, SO4), 1 pocket (best druggability 0.30). MolNFT v1 #151565 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6HRJ
- Type
- protein
- Length
- 202 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yndl
- UniProt
- A0A164XNU3
- Ligands
- 010, FAH, SO4
- Pockets
- 1 · best druggability 0.30
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yndl | protein | 202 | 37% helix, 23% strand | A0A164XNU3 |
Ligands and binding sites
- 010 · phenylmethanol · ligand · chains A
- FAH · fluoroacetic acid · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
- FLC · Citrate anion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.30 | 0.74 | 16 | FAH |
Compared structures
- 6HRJ · Apo - YndL · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A164XNU3
- Elsewhere: RCSB PDB 6HRJ · PDBe 6HRJ · UniProt A0A164XNU3
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