MolNFT v1 · #15156 · protein
Amylosucrase mutant E328Q co-crystallized with maltoheptaose.
1MVY: “Amylosucrase mutant E328Q co-crystallized with maltoheptaose.”. X-ray diffraction, 1 ligand (GLC), 5 pockets (best druggability 0.75). MolNFT v1 #15156 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1MVY
- Type
- protein
- Length
- 628 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Amylosucrase
- EC
- 2.4.1.4
- Ligands
- GLC
- Pockets
- 5 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Amylosucrase (EC 2.4.1.4) | protein | 628 | 42% helix, 15% strand | — |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 6 copies · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 429 | 0.75 | 0.84 | 52 | TRS |
| 2 | 189 | 0.58 | 0.81 | 32 | empty |
| 3 | 65 | 0.40 | 0.80 | 14 | empty |
| 4 | 63 | 0.32 | 0.75 | 20 | empty |
| 5 | 50 | 0.24 | 0.72 | 10 | empty |
Compared structures
- 1MVY · Amylosucrase mutant E328Q co-crystallized with maltoheptaose. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1MVY · PDBe 1MVY
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