MolNFT v1 · #151550 · protein
Apo form of penicillin-binding protein 3 from P. aeruginosa
6HR4 · Peptidoglycan D,D-transpeptidase ftsi: “Apo form of penicillin-binding protein 3 from P. aeruginosa”. X-ray diffraction, 2 pockets (best druggability 0.51). MolNFT v1 #151550 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6HR4
- Type
- protein
- Length
- 504 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidoglycan D,D-transpeptidase ftsi
- EC
- 3.4.16.4
- UniProt
- G3XD46
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidoglycan D,D-transpeptidase ftsi (EC 3.4.16.4) | protein | 504 | 34% helix, 25% strand | G3XD46 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 221 | 0.51 | 0.76 | 32 | empty |
| 2 | 115 | 0.39 | 0.75 | 23 | empty |
Compared structures
- 6HR4 · Apo form of penicillin-binding protein 3 from P. aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
- G3XD46 · AlphaFold monomer V2.0 prediction for peptidoglycan D,D-transpeptidase ftsi (G3XD46) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G3XD46
- Elsewhere: RCSB PDB 6HR4 · PDBe 6HR4 · UniProt G3XD46
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