MolNFT v1 · #15153 · protein
Single chain fv of C219 heavy chain V101L mutant in complex with synthetic epitope peptide
1MVU · Ig kappa-chain vj-region (light chain): “Single chain fv of C219 heavy chain V101L mutant in complex with synthetic epitope peptide”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.30). MolNFT v1 #15153 on…
- PDB
- 1MVU
- Type
- protein
- Length
- 246 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ig kappa-chain vj-region (light chain); Ig vdj-region (heavy chain); P-glycoprotein
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.30
Structure
x-ray diffraction · 3 distinct chains · 9% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ig kappa-chain vj-region (light chain) | protein | 112 | 3% helix, 49% strand | — |
| B | Ig vdj-region (heavy chain) | protein | 121 | 7% helix, 50% strand | — |
| P | P-glycoprotein | protein | 13 | 77% helix, 0% strand | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.30 | 0.74 | 15 | empty |
| 2 | 66 | 0.28 | 0.73 | 21 | empty |
| 3 | 61 | 0.27 | 0.73 | 11 | empty |
Interfaces
3 interfaces between chains.
- A–B · 883 Ų buried · 11 hydrogen bonds · protein-protein
- B–P · 336 Ų buried · 5 hydrogen bonds · protein-protein
- A–P · 254 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1MVU · Single chain fv of C219 heavy chain V101L mutant in complex with synthetic epitope peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1MVU · PDBe 1MVU
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