MolNFT v1 · #151505 · protein
Crystal structure of mouse fetuin-B
6HPV: “Crystal structure of mouse fetuin-B”. X-ray diffraction, 1 ligand (NAG), 4 pockets (best druggability 0.58). MolNFT v1 #151505 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6HPV
- Type
- protein
- Length
- 299 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fetuin-B
- UniProt
- Q9QXC1
- Ligands
- NAG
- Pockets
- 4 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fetuin-B | protein | 299 | 17% helix, 38% strand | Q9QXC1 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 249 | 0.58 | 0.79 | 36 | empty |
| 2 | 116 | 0.47 | 0.79 | 19 | empty |
| 3 | 123 | 0.43 | 0.77 | 28 | empty |
| 4 | 70 | 0.31 | 0.74 | 15 | empty |
Modifications
Observed in the structure: 5 disulfide, 2 glycan (disulfide, N-glycosylation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9QXC1
- Elsewhere: RCSB PDB 6HPV · PDBe 6HPV · UniProt Q9QXC1
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