MolNFT v1 · #15145 · protein + DNA
MVM(STRAIN I), COMPLEX(VIRAL COAT/DNA), VP2, PH=7.5, T=4 degrees C
1MVM · Protein (murine minute virus coat protein): “MVM(STRAIN I), COMPLEX(VIRAL COAT/DNA), VP2, PH=7.5, T=4 degrees C”. X-ray diffraction, 13 pockets (best druggability 0.62). MolNFT v1 #15145 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1MVM
- Type
- protein + DNA
- Length
- 565 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (murine minute virus coat protein); DNA…
- UniProt
- P07302
- Pockets
- 13 · best druggability 0.62
Structure
x-ray diffraction · 4 distinct chains · 5% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (murine minute virus coat protein) | protein | 549 | 5% helix, 22% strand | P07302 |
| B | DNA (5'-D(*CP*CP*AP*CP*CP*CP*CP*AP*AP*CP*A)-3') | dna | 11 | — | — |
| C | DNA (5'-D(*CP*AP*AP*A)-3') | dna | 4 | — | — |
| D | DNA (5'-D(*A)-3') | dna | 1 | — | — |
Pockets
13 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 503 | 0.62 | 0.75 | 51 | empty |
| 2 | 124 | 0.57 | 0.83 | 32 | empty |
| 3 | 168 | 0.52 | 0.79 | 28 | empty |
| 4 | 137 | 0.45 | 0.77 | 22 | empty |
| 5 | 101 | 0.37 | 0.75 | 24 | empty |
Interfaces
3 interfaces between chains.
- A–B · 198 Ų buried · 7 hydrogen bonds · protein-nucleic
- B–D · 125 Ų buried · 3 hydrogen bonds · nucleic-nucleic
- B–C · 95 Ų buried · 3 hydrogen bonds · nucleic-nucleic
Compared structures
- 1MVM · MVM(STRAIN I), COMPLEX(VIRAL COAT/DNA), VP2, PH=7.5, T=4 degrees C · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07302
- Elsewhere: RCSB PDB 1MVM · PDBe 1MVM · UniProt P07302
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