MolNFT v1 · #151431 · protein
Crystal structure of idmh 96-104 loop truncation variant
6HNM · Putative polyketide cyclase idmh: “Crystal structure of idmh 96-104 loop truncation variant”. X-ray diffraction, 4 pockets (best druggability 0.74). MolNFT v1 #151431 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6HNM
- Type
- protein
- Length
- 257 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative polyketide cyclase idmh
- UniProt
- C5HV10
- Pockets
- 4 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative polyketide cyclase idmh | protein | 128 | 36% helix, 42% strand | C5HV10 |
| B | Putative polyketide cyclase idmh | protein | 129 | 36% helix, 42% strand | C5HV10 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 306 | 0.74 | 0.86 | 30 | empty |
| 2 | 341 | 0.74 | 0.85 | 31 | empty |
| 3 | 86 | 0.43 | 0.79 | 21 | empty |
| 4 | 78 | 0.42 | 0.80 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 1124 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6HNM · Crystal structure of IdmH 96-104 loop truncation variant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C5HV10
- Elsewhere: RCSB PDB 6HNM · PDBe 6HNM · UniProt C5HV10
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