MolNFT v1 · #151231 · protein
Crystal structure of the medfly odorant binding protein CCAPOBP22/CCAPOBP69A
6HHE · Odorant binding protein OBP69A: “Crystal structure of the medfly odorant binding protein CCAPOBP22/CCAPOBP69A”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.72). MolNFT v1 #151231 on GenesisL1: 3D structure…
- PDB
- 6HHE
- Type
- protein
- Length
- 116 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Odorant binding protein OBP69A
- UniProt
- W8W3V2
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 72% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Odorant binding protein OBP69A | protein | 116 | 72% helix, 2% strand | W8W3V2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 219 | 0.72 | 0.86 | 22 | empty |
| 2 | 57 | 0.36 | 0.78 | 12 | SO4 |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 6HHE · Crystal structure of the medfly Odorant Binding Protein CcapOBP22/CcapOBP69a · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W8W3V2
- Elsewhere: RCSB PDB 6HHE · PDBe 6HHE · UniProt W8W3V2
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