MolNFT v1 · #151070 · protein
Adenovirus type 5 fiber knob protein at 1.49A resolution
6HCN · Fiber protein: “Adenovirus type 5 fiber knob protein at 1.49A resolution”. X-ray diffraction, 1 ligand (MG), 7 pockets (best druggability 0.72). MolNFT v1 #151070 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6HCN
- Type
- protein
- Length
- 560 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fiber protein
- UniProt
- P11818
- Ligands
- MG
- Pockets
- 7 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 3% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Fiber protein | protein | 186 | 3% helix, 42% strand | P11818 |
| B | Fiber protein | protein | 188 | 3% helix, 43% strand | P11818 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.72 | 0.97 | 24 | empty |
| 2 | 84 | 0.40 | 0.78 | 21 | empty |
| 3 | 83 | 0.38 | 0.77 | 21 | empty |
| 4 | 62 | 0.38 | 0.79 | 18 | empty |
| 5 | 66 | 0.37 | 0.78 | 18 | EDO |
Interfaces
3 interfaces between chains.
- A–C · 1059 Ų buried · 16 hydrogen bonds · protein-protein
- B–C · 1053 Ų buried · 15 hydrogen bonds · protein-protein
- A–B · 1046 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 6HCN · Adenovirus Type 5 Fiber Knob protein at 1.49A resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11818
- Elsewhere: RCSB PDB 6HCN · PDBe 6HCN · UniProt P11818
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