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MolNFT v1 · #150955 · protein

T16A variant of beta-phosphoglucomutase from lactococcus lactis with phosphate and tris bound in an open conformer to 1.5 a.

6H94: “T16A variant of beta-phosphoglucomutase from lactococcus lactis with phosphate and tris bound in an open…”. X-ray diffraction, 2 ligands (MG, PO4), 1 pocket (best druggability 0.68). MolNFT v1 #150955 on GenesisL1: 3D structure…

PDB
6H94
Type
protein
Length
219 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Beta-phosphoglucomutase
EC
5.4.2.6
UniProt
P71447
Ligands
MG, PO4
Pockets
1 · best druggability 0.68

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 11% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ABeta-phosphoglucomutase (EC 5.4.2.6)protein21952% helix, 11% strandP71447

Ligands and binding sites

  • MG · Magnesium ion · metal · chains A
  • PO4 · Phosphate ion · ion · chains A
  • EDO · 1,2-ethanediol · additive · 3 copies · chains A
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
13970.680.8133PO4, TRS

Compared structures

  • 6H94 · T16A variant of beta-phosphoglucomutase from Lactococcus lactis with phosphate and TRIS… · the same entry in another collection · chain A against A, TM-score 1.00
  • P71447 · AlphaFold monomer V2.0 prediction for beta-phosphoglucomutase (P71447) · a predicted model of the same protein · chain A against A, TM-score 0.84

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