Beta-phosphoglucomutase from lactococcus lactis in an open conformer complexed with magnesium trifluoride to 1.8 a.

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 11% strand (DSSP).

Ligands and binding sites

• MGF · Trifluoromagnesate · ligand · 2 copies · chains A, B
• MG · Magnesium ion · metal · 2 copies · chains A, B
• EDO · 1,2-ethanediol · additive · 8 copies · chains A, B
• ACT · Acetate ion · additive · chains A
• PDO · 1,3-propandiol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Interfaces

1 interface between chains.

• A–B · 598 Ų buried · 6 hydrogen bonds · protein-protein

Compared structures

• 6H8X · Beta-phosphoglucomutase from Lactococcus lactis in an open conformer complexed with… · the same entry in another collection · chain A against A, TM-score 1.00
• P71447 · AlphaFold monomer V2.0 prediction for beta-phosphoglucomutase (P71447) · a predicted model of the same protein · chain A against A, TM-score 0.86

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P71447
• Elsewhere: RCSB PDB 6H8X · PDBe 6H8X · UniProt P71447