MolNFT v1 · #150860 · protein

Crystal structures of the murine class I major histocompatibility complex H-2DB in complex with adenovirus-derived peptide AD10

6H6D: “Crystal structures of the murine class I major histocompatibility complex H-2DB in complex with…”. X-ray diffraction, 2 ligands (CL, SO4). MolNFT v1 #150860 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6H6D
Type: protein
Length: 763 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P01899, P01887, P03255
Ligands: CL, SO4

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	272	—	P01899
B, E	—	protein	99	—	P01887
C, F	—	protein	10	—	P03255
D	—	protein	273	—	P01899

Ligands and binding sites

CL · Chloride ion · ion · 11 copies · chains A, B, D, E
SO4 · Sulfate ion · ion · 4 copies · chains A, B, D, E
GOL · Glycerol · additive · 8 copies · chains A, B, D, E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6H6D · Crystal structures of the murine class I major histocompatibility complex H-2Db in… · the same entry in another collection · chain F against F, TM-score 1.00
P01887 · AlphaFold monomer V2.0 prediction for beta-2-microglobulin (P01887) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01899
Every structure of UniProt P01887
Every structure of UniProt P03255
Elsewhere: RCSB PDB 6H6D · PDBe 6H6D · UniProt P01899 · UniProt P01887 · UniProt P03255

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