MolNFT v1 · #150778 · protein
Oropouche virus glycoprotein gc head domain
6H3X · Polyprotein: “Oropouche virus glycoprotein gc head domain”. X-ray diffraction, 3 ligands (NAG, SO4, CL), 1 pocket (best druggability 0.37). MolNFT v1 #150778 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6H3X
- Type
- protein
- Length
- 221 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyprotein
- UniProt
- A0A0D4BSW3
- Ligands
- NAG, SO4, CL
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 68% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyprotein | protein | 221 | 68% helix, 0% strand | A0A0D4BSW3 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 102 | 0.37 | 0.75 | 16 | empty |
Modifications
Observed in the structure: 4 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 6H3X · Oropouche Virus Glycoprotein Gc Head Domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D4BSW3
- Elsewhere: RCSB PDB 6H3X · PDBe 6H3X · UniProt A0A0D4BSW3
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