MolNFT v1 · #150777 · protein
La crosse virus glycoprotein gc head domain
6H3W · Envelopment polyprotein: “La crosse virus glycoprotein gc head domain”. X-ray diffraction, 3 ligands (NAG, MAN, BMA), 1 pocket (best druggability 0.38). MolNFT v1 #150777 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6H3W
- Type
- protein
- Length
- 246 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Envelopment polyprotein
- UniProt
- Q8JPR1
- Ligands
- NAG, MAN, BMA
- Pockets
- 1 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 67% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Envelopment polyprotein | protein | 246 | 67% helix, 1% strand | Q8JPR1 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 2 copies
- BMA · beta-D-mannopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.38 | 0.77 | 15 | empty |
Modifications
Observed in the structure: 4 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 6H3W · La Crosse Virus Glycoprotein Gc Head Domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8JPR1
- Elsewhere: RCSB PDB 6H3W · PDBe 6H3W · UniProt Q8JPR1
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