MolNFT v1 · #150774 · protein
Schmallenberg virus glycoprotein gc head domain in complex with scfv 1C11
6H3T: “Schmallenberg virus glycoprotein gc head domain in complex with scfv 1C11”. X-ray diffraction, 4 ligands (NAG, MAN, BMA). MolNFT v1 #150774 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6H3T
- Type
- protein
- Length
- 924 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- H2AM12
- Ligands
- NAG, MAN, BMA, FUC
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H, I | — | protein | 118 | — | — |
| L, M | — | protein | 113 | — | — |
| A | — | protein | 230 | — | H2AM12 |
| B | — | protein | 232 | — | H2AM12 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 8 copies · chains A, B
- MAN · alpha-D-mannopyranose · sugar · 8 copies · chains A, B
- BMA · beta-D-mannopyranose · sugar · 2 copies
- FUC · alpha-L-fucopyranose · sugar · 2 copies · chains H, A, I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H3T · Schmallenberg Virus Glycoprotein Gc Head Domain in Complex with scFv 1C11 · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H2AM12
- Elsewhere: RCSB PDB 6H3T · PDBe 6H3T · UniProt H2AM12
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