MolNFT v1 · #150764 · protein
Structural snapshots of the type 9 protein translocon plug-complex
6H3J · Protein involved in gliding motility spra: “Structural snapshots of the type 9 protein translocon plug-complex”. Electron microscopy, 20 pockets (best druggability 0.80). MolNFT v1 #150764 on GenesisL1: 3D structure, binding sites…
- PDB
- 6H3J
- Type
- protein
- Length
- 2,511 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein involved in gliding motility spra; Peptidyl-prolyl cis-trans isomerase; Plug
- EC
- 5.2.1.8
- UniProt
- A0A1M5G5I4, A5F9W9, A5FJ36
- Pockets
- 20 · best druggability 0.80
Structure
electron microscopy · 3 distinct chains · 7% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein involved in gliding motility spra | protein | 1988 | 7% helix, 20% strand | A0A1M5G5I4 |
| B | Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) | protein | 126 | 15% helix, 20% strand | A5F9W9 |
| C | Plug | protein | 397 | 4% helix, 30% strand | A5FJ36 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 929 | 0.80 | 0.83 | 133 | empty |
| 2 | 1076 | 0.80 | 0.81 | 104 | empty |
| 3 | 135 | 0.78 | 0.96 | 36 | empty |
| 4 | 571 | 0.75 | 0.83 | 83 | empty |
| 5 | 113 | 0.75 | 0.95 | 26 | empty |
Interfaces
2 interfaces between chains.
- A–C · 4514 Ų buried · 83 hydrogen bonds · protein-protein
- A–B · 1131 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 6H3J · Structural snapshots of the Type 9 protein translocon Plug-complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1M5G5I4
- Every structure of UniProt A5F9W9
- Every structure of UniProt A5FJ36
- Elsewhere: RCSB PDB 6H3J · PDBe 6H3J · UniProt A0A1M5G5I4 · UniProt A5F9W9 · UniProt A5FJ36
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