MolNFT v1 · #150650 · protein
The crystal structure of engineered cytochrome C peroxidase from saccharomyces cerevisiae with a HIS175ME-his proximal ligand substitution
6H08: “The crystal structure of engineered cytochrome C peroxidase from saccharomyces cerevisiae with a HIS175ME-his…”. X-ray diffraction, 4 ligands (HEM, CO, NA). MolNFT v1 #150650 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6H08
- Type
- protein
- Length
- 889 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P00431
- Ligands
- HEM, CO, NA, MN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 295 | — | P00431 |
| B, C | — | protein | 297 | — | P00431 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 3 copies · chains A, B, C
- CO · Cobalt (II) ion · metal · 6 copies · chains A, B, C
- NA · Sodium ion · metal · 2 copies · chains A, B
- MN · Manganese (II) ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6H08 · The crystal structure of engineered cytochrome c peroxidase from Saccharomyces cerevisiae… · the same entry in another collection · chain A against A, TM-score 1.00
- P00431 · AlphaFold monomer V2.0 prediction for cytochrome C peroxidase, mitochondrial (P00431) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00431
- Elsewhere: RCSB PDB 6H08 · PDBe 6H08 · UniProt P00431
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