MolNFT v1 · #150636 · RNA
Solution NMR structure of the tetramethylrhodamine (tmr) aptamer 3 in complex with 5-tamra
6GZR · Tetramethylrhodamine aptamer: “Solution NMR structure of the tetramethylrhodamine (tmr) aptamer 3 in complex with 5-tamra”. Solution nmr, 1 ligand (FH8), 2 pockets (best druggability 0.42). MolNFT v1 #150636 on GenesisL1: 3D…
- PDB
- 6GZR
- Type
- RNA
- Length
- 48 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tetramethylrhodamine aptamer
- Ligands
- FH8
- Pockets
- 2 · best druggability 0.42
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tetramethylrhodamine aptamer | rna | 48 | — | — |
Ligands and binding sites
- FH8 · 5-carboxy methylrhodamine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 162 | 0.42 | 0.75 | 16 | empty |
| 2 | 54 | 0.32 | 0.78 | 15 | empty |
Compared structures
- 6GZR · Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6GZR · PDBe 6GZR
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