MolNFT v1 · #150631 · protein

Complex between the dynein light chain DYNLL1/DLC8 and a peptide from the large myelin-associated glycoprotein L-mag

6GZL · Dynein light chain 1, cytoplasmic: “Complex between the dynein light chain DYNLL1/DLC8 and a peptide from the large myelin-associated…”. X-ray diffraction, 1 ligand (CL). MolNFT v1 #150631 on GenesisL1: 3D structure, binding sites…

PDB: 6GZL
Type: protein
Length: 99 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dynein light chain 1, cytoplasmic; Pro-thr-lys-asp-ser-tyr-thr-leu-thr-glu-glu-leu
UniProt: P63167
Ligands: CL

Structure

x-ray diffraction · 2 distinct chains · 33% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dynein light chain 1, cytoplasmic	protein	87	38% helix, 40% strand	P63167
B	Pro-thr-lys-asp-ser-tyr-thr-leu-thr-glu-glu-leu	protein	12	0% helix, 58% strand	—

Ligands and binding sites

CL · Chloride ion · ion · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 744 Å² buried · 20 hydrogen bonds · protein-protein

Compared structures

6GZL · Complex between the dynein light chain DYNLL1/DLC8 and a peptide from the large… · the same entry in another collection · chain A against A, TM-score 1.00
P63167 · AlphaFold monomer V2.0 prediction for dynein light chain 1, cytoplasmic (P63167) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P63167
Elsewhere: RCSB PDB 6GZL · PDBe 6GZL · UniProt P63167

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