MolNFT v1 · #150550 · protein
Blood group synthase aaglyb in its apo form cryoprotected with peg 3350
6GWZ · Abo blood group (transferase a, alpha 1-3-N…: “Blood group synthase aaglyb in its apo form cryoprotected with peg 3350”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.62). MolNFT v1 #150550 on GenesisL1: 3D…
- PDB
- 6GWZ
- Type
- protein
- Length
- 288 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Abo blood group (transferase a, alpha 1-3-N- acetylgalactosaminyltransferase transferase…
- UniProt
- F0X360
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Abo blood group (transferase a, alpha 1-3-N- acetylgalactosaminyltransferase transferase B, alpha 1-3- galactosyltransferase) | protein | 288 | 32% helix, 19% strand | F0X360 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 414 | 0.62 | 0.77 | 32 | empty |
Compared structures
- 6GWZ · Blood group synthase AAGlyB in its apo form cryoprotected with PEG 3350 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F0X360
- Elsewhere: RCSB PDB 6GWZ · PDBe 6GWZ · UniProt F0X360
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