MolNFT v1 · #150425 · protein
17BETA-hydroxysteroid dehydrogenase 14 variant T205 in complex with FB211
6GTB · 17-beta-hydroxysteroid dehydrogenase 14: “17BETA-hydroxysteroid dehydrogenase 14 variant T205 in complex with FB211”. X-ray diffraction, 4 ligands (NAD, FBK, BGC), 1 pocket (best druggability 0.77). MolNFT v1 #150425 on GenesisL1…
- PDB
- 6GTB
- Type
- protein
- Length
- 257 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 17-beta-hydroxysteroid dehydrogenase 14
- EC
- 1.1.1.-
- UniProt
- Q9BPX1
- Ligands
- NAD, FBK, BGC, NA
- Pockets
- 1 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 17-beta-hydroxysteroid dehydrogenase 14 (EC 1.1.1.-) | protein | 257 | 50% helix, 15% strand | Q9BPX1 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · chains A
- FBK · 3-[6-(3-hydroxyphenyl)pyridin-2-yl]benzoic acid · ligand · chains A
- BGC · beta-D-glucopyranose · sugar · chains A
- NA · Sodium ion · metal · chains A
- EDO · 1,2-ethanediol · additive · chains A
- DMS · Dimethyl sulfoxide · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 713 | 0.77 | 0.82 | 64 | NAD, FBK, DMS |
Compared structures
- 6GTB · 17beta-hydroxysteroid dehydrogenase 14 variant T205 in complex with FB211 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9BPX1 · AlphaFold monomer V2.0 prediction for 17-beta-hydroxysteroid dehydrogenase 14 (Q9BPX1) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BPX1
- Elsewhere: RCSB PDB 6GTB · PDBe 6GTB · UniProt Q9BPX1
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